Removes the TODO in Sync that left files static after their first embed. Edits to brain/wiki/ and brain/knowledge/ now surface in subsequent syncs without manual /backfill-embeddings calls. Approach - Store interface: KnownPaths → KnownPathsWithTime returning path → updated_at. Callers compare against file mtime to detect edits. - PGStore: SELECT path, updated_at FROM brain_embeddings. - Sync groups known chunks by parent path and tracks the EARLIEST updated_at per parent. A file is stale when its mtime is after that oldest chunk's timestamp — any chunk older than the file means at least one chunk hasn't been refreshed since the last edit. - Stale-path rewrite: delete every old chunk for the parent (handles "file shrunk → fewer chunks → orphan rows at higher #NNNN" cleanly), then re-chunk + re-embed + re-upsert. Tests - New: TestSync_ReembedsFileWhenMtimeNewer — file mtime forced into the future vs store updated_at; Sync deletes old chunk + upserts fresh one. - New: TestSync_SkipsFileWhenMtimeOlder — file mtime backdated; Sync is a no-op (no upserts, no deletes). - Updated: stubStore.known is now map[string]time.Time. A zero value resolves to a far-future sentinel so existing "skip if already known" tests keep passing without per-test setup. - pg_test renamed KnownPaths integration → KnownPathsWithTime; asserts updated_at is non-zero and within 5s of insert wall-clock. Backward compat - brain_embeddings rows pre-dating this change carry valid updated_at values (column was always populated via `DEFAULT now()` + ON CONFLICT `updated_at = now()`). No migration needed. Live pod will start re-embedding any file whose source has been edited since its chunks were originally written. Closes gitea/mathias/hyperguild#23.
206 lines
6.7 KiB
Go
206 lines
6.7 KiB
Go
package vectorstore
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import (
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"context"
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"fmt"
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"log/slog"
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"os"
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"path/filepath"
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"strings"
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"time"
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)
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// Embedder produces dense vectors. The embed package's Client satisfies
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// this; it's declared locally so vectorstore doesn't depend on embed.
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type Embedder interface {
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Embed(ctx context.Context, text string) ([]float32, error)
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}
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// Store is the subset of PGStore that Sync needs. Lets tests stub it.
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type Store interface {
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// KnownPathsWithTime returns every embedded chunk path paired with the
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// row's updated_at. Sync uses the timestamp to detect edits — a file
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// whose mtime is newer than ANY of its chunks' updated_at is re-embedded
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// from scratch (old chunks deleted, fresh chunks upserted).
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KnownPathsWithTime(ctx context.Context) (map[string]time.Time, error)
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Upsert(ctx context.Context, path string, embedding []float32) error
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Delete(ctx context.Context, path string) error
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}
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// SyncResult tallies what Sync did. Returned for logs / metrics; callers
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// generally don't act on the fields directly.
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type SyncResult struct {
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Added int
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Updated int
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Deleted int
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Errors []error
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}
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// scanDirs is the set of brainDir subdirectories whose .md files are
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// embedded for vector retrieval. wiki/ holds LLM-extracted entity and
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// source pages; knowledge/ holds curated hand-written entries.
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var scanDirs = []string{"wiki", "knowledge"}
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// maxChunkBytes is the per-chunk byte budget passed to ChunkMarkdown.
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// Sized to fit comfortably under nomic-embed-text's 2048-token default
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// context (~4 chars/token for English markdown → ~8 KB ceiling; we sit
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// at 4 KB to leave headroom for unicode, code blocks, and tokenizer
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// variance).
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const maxChunkBytes = 4000
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// Sync brings the embedding store in line with brain/{wiki,knowledge}/
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// on disk:
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// - new files (in the tree, not in the store) get embedded + upserted
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// - files whose mtime exceeds the store's updated_at get re-embedded
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// - files no longer on disk get deleted from the store
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//
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// Designed to be called on a ticker. Best-effort: per-file errors are
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// collected into SyncResult.Errors and do not abort the run.
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func Sync(ctx context.Context, brainDir string, store Store, embedder Embedder) (SyncResult, error) {
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var res SyncResult
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if store == nil || embedder == nil {
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return res, nil
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}
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known, err := store.KnownPathsWithTime(ctx)
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if err != nil {
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return res, fmt.Errorf("known paths: %w", err)
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}
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// Group known chunks by parent path and remember the EARLIEST
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// updated_at per parent. A file is considered stale if its mtime is
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// after the oldest of its chunk rows — i.e. at least one chunk hasn't
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// been refreshed since the last edit. Also keep the full chunk-path
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// list per parent so we can delete every old chunk before re-embedding
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// (handles "file shrunk → fewer chunks → orphan rows" cleanly).
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type parentState struct {
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minUpdatedAt time.Time
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chunkPaths []string
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}
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parents := make(map[string]*parentState, len(known))
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for p, t := range known {
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parent := ParentPath(p)
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ps, ok := parents[parent]
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if !ok {
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ps = &parentState{minUpdatedAt: t}
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parents[parent] = ps
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} else if t.Before(ps.minUpdatedAt) {
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ps.minUpdatedAt = t
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}
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ps.chunkPaths = append(ps.chunkPaths, p)
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}
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seenParents := make(map[string]struct{})
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for _, sub := range scanDirs {
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root := filepath.Join(brainDir, sub)
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if _, err := os.Stat(root); os.IsNotExist(err) {
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continue
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}
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err = filepath.WalkDir(root, func(path string, d os.DirEntry, err error) error {
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if err != nil {
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return err
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}
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if d.IsDir() || !strings.HasSuffix(path, ".md") || d.Name() == "_index.md" {
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return nil
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}
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rel, err := filepath.Rel(brainDir, path)
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if err != nil {
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return err
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}
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relSlash := filepath.ToSlash(rel)
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seenParents[relSlash] = struct{}{}
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if ps, ok := parents[relSlash]; ok {
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// File already has chunks in the store. Re-embed only when
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// the file has been edited since the oldest chunk was
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// written. Tolerate clock skew with a sub-second grace.
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info, statErr := d.Info()
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if statErr != nil {
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res.Errors = append(res.Errors, fmt.Errorf("stat %s: %w", relSlash, statErr))
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return nil
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}
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if !info.ModTime().After(ps.minUpdatedAt) {
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return nil
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}
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// Stale: delete old chunks before re-embedding so a shrunk
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// file doesn't leave orphan rows at higher #NNNN indexes.
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for _, oldPath := range ps.chunkPaths {
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if delErr := store.Delete(ctx, oldPath); delErr != nil {
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res.Errors = append(res.Errors, fmt.Errorf("delete %s for re-embed: %w", oldPath, delErr))
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return nil
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}
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}
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}
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content, readErr := os.ReadFile(path)
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if readErr != nil {
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res.Errors = append(res.Errors, fmt.Errorf("read %s: %w", relSlash, readErr))
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return nil
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}
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chunks := NumberChunks(relSlash, ChunkMarkdown(string(content), maxChunkBytes))
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for _, ch := range chunks {
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vec, embErr := embedder.Embed(ctx, ch.Content)
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if embErr != nil {
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res.Errors = append(res.Errors, fmt.Errorf("embed %s: %w", ch.Path, embErr))
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continue
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}
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if upErr := store.Upsert(ctx, ch.Path, vec); upErr != nil {
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res.Errors = append(res.Errors, fmt.Errorf("upsert %s: %w", ch.Path, upErr))
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continue
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}
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res.Added++
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}
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return nil
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})
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if err != nil {
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return res, fmt.Errorf("walk %s: %w", sub, err)
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}
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}
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// Drop chunk rows whose parent file is gone.
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for path := range known {
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if _, ok := seenParents[ParentPath(path)]; ok {
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continue
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}
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if err := store.Delete(ctx, path); err != nil {
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res.Errors = append(res.Errors, fmt.Errorf("delete %s: %w", path, err))
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continue
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}
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res.Deleted++
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}
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return res, nil
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}
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// StartSync launches Sync on a ticker in a background goroutine. The
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// goroutine exits when ctx is cancelled. Failures are logged via slog.
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func StartSync(ctx context.Context, brainDir string, store Store, embedder Embedder, interval time.Duration) {
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if interval <= 0 {
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interval = 5 * time.Minute
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}
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go func() {
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t := time.NewTicker(interval)
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defer t.Stop()
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// Run once immediately so first-boot doesn't wait a full tick.
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if r, err := Sync(ctx, brainDir, store, embedder); err != nil {
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slog.Error("embed sync failed", "err", err)
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} else if r.Added+r.Deleted > 0 || len(r.Errors) > 0 {
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slog.Info("embed sync", "added", r.Added, "deleted", r.Deleted, "errors", len(r.Errors))
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for _, e := range r.Errors {
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slog.Warn("embed sync item failed", "err", e)
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}
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}
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for {
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select {
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case <-ctx.Done():
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return
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case <-t.C:
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if r, err := Sync(ctx, brainDir, store, embedder); err != nil {
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slog.Error("embed sync failed", "err", err)
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} else if r.Added+r.Deleted > 0 || len(r.Errors) > 0 {
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slog.Info("embed sync", "added", r.Added, "deleted", r.Deleted, "errors", len(r.Errors))
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}
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}
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}
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}()
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}
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