Commit 2 of Track A. Service stays a no-op until BRAIN_GRAPH_ENABLED= true; flipping it on creates the schema (idempotent), starts indexing every successful write, and optionally backfills the existing brain dir. - internal/graphsync: best-effort wrapper around graph.Extract + graphstore. IndexDoc reads docPath under brainDir, parses, upserts entity + replaces edges. BackfillFromBrainDir walks wiki/ + knowledge/. Both are no-ops on nil store so callers wire unconditionally. - mcp.Server gains WithGraph builder + graphsync.Store field. brain_write, brain_ingest, brain_ingest_raw, brain_tunnel call indexInGraph after success — failures slog.Warn but never propagate (graph is augmentation, not correctness). - cmd/server gates the wiring on BRAIN_GRAPH_ENABLED=true (default off so first rollout doesn't surprise). BRAIN_GRAPH_BACKFILL=true triggers a one-shot walk of the brain dir on boot. Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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